Numbat (Myrmecobius fasciatus)
| Genome & Transcriptome Data | NCBI Accession: PRJNA786364 |
Publication: Emma Peel, Luke Silver, Parice Brandies, Takashi Hayakawa, Katherine Belov, Carolyn J. Hogg, Genome assembly of the numbat (Myrmecobius fasciatus), the only termitivorous marsupial, Gigabyte, 2022
Download data through hyperlinks above or using the AWS Command Line Interface
aws s3 cp s3://threatenedspecies/Myrmecobius_fasciatus/Myrfas_md5sum.txt .
aws s3 cp s3://threatenedspecies/Myrmecobius_fasciatus/mMyrfas.global.20211206.fasta .
aws s3 cp s3://threatenedspecies/Myrmecobius_fasciatus/mMyrfas1.pri.20211206.fasta.gz .
aws s3 cp s3://threatenedspecies/Myrmecobius_fasciatus/mMyrfas1.pri.20211206.gff3.gz .
aws s3 cp s3://threatenedspecies/Myrmecobius_fasciatus/NumbatReadMe.txt .
aws s3 sync s3://threatenedspecies/Myrmecobius_fasciatus/ .
| Assembly Statistics | |
|---|---|
| Assembly | 10X Genomics |
| Assembler program | Supernova v2.1.1 |
| Genome size | 3.42 GB |
| #contigs | 219,447 |
| Contig N50 | 0.038 Mb |
| # scaffolds | 112,299 |
| Scaffold N50 | 0.223 Mb |
| Largest Scaffold | 2.05 Mb |
| Largest Contig | 0.326 Mb |
| % Genome in Scaffolds | 96.47% |
| % Gaps | 3.52% |
| BUSCO | v3.1.0 | v5.2.2 |
|---|---|---|
| Genes | 4104 | 9226 |
| Complete | 82.8% | 78.7% |
| Single Copy | 79.1% | 73.2% |
| Duplicated | 3.7% | 5.5% |
| Fragmented | 9.6% | 6.3% |
| Missing | 7.6% | 15.0% |
This genome data was supported by funding from the Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science (CE200100012) and Discovery Project (DP180102465), and the Oz Mammals Genomics consortium supported by funding from Bioplatforms Australia through the Australian Government National Collaborative Research Infrastructure Strategy (NCRIS). Image was supplied by Wayne Lawler, Australian Wildlife Conservancy.