Kroombit tinkerfrog (Taudactylus pleione)
| Genome & Transcriptome Data |
Citation: Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, The genome sequence of the critically endangered Kroombit tinkerfrog (Taudactylus pleione).
Download data through hyperlinks above or using the AWS Command Line Interface
aws s3 cp --no-sign-request s3://threatenedspecies/Taudactylus_pleione/Tauple_md5sum.txt .
aws s3 cp --no-sign-request s3://threatenedspecies/Taudactylus_pleione/aTauple2.global.20223101.fasta.gz .
aws s3 cp --no-sign-request s3://threatenedspecies/Taudactylus_pleione/aTauple2.pri.20223101.fasta.gz .
aws s3 cp --no-sign-request s3://threatenedspecies/Taudactylus_pleione/aTauple2.fgenesh.20223101.gff3 .
aws s3 cp --no-sign-request s3://threatenedspecies/Taudactylus_pleione/README-AWS.txt .
aws s3 sync --no-sign-request s3://threatenedspecies/Taudactylus_pleione/ .
| Assembly Statistics | |
|---|---|
| Assembly | PacBio HiFi |
| Assembler program | hifiasm v0.16.1-r375 |
| Genome size | 5.19 GB |
| #contigs | 4196 |
| Contig N50 | 8.853 Mb |
| Largest Contig | 82.089 Mb |
| BUSCO | v5.2.2 vertebrata odb10 |
|---|---|
| Genes | 3354 |
| Complete | 85.0% |
| Single Copy | 83.2% |
| Duplicated | 1.8% |
| Fragmented | 5.8% |
| Missing | 9.2% |
This genome data was supported by funding from the Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science (CE200100012); the NCRIS supported Bioplatforms Australia Threatened Species Initiative; the Australian Federal Government Bushfire Recovery Scheme (ERF-WRR2-020). We pay our respects to the Bailai, Gooreng Gooreng, and Gurang Aboriginal elders, past and present. We thank Michael Vella and Andrew Hill from Currumbin Wildlife Sanctuary for obtaining and providing tadpole samples. Computational resources were provided by Amazon Web Services and RONIN; the Australian FGENESH++ Service provided by the Australian BioCommons and the Pawsey Supercomputing Research Centre with funding from the Australian Government and the Government of Western Australia; Galaxy Australia, a service provided by the Australian Biocommons and its partners; and the University of Sydney’s High Performance Computing facility Artemis provided by the Sydney Informatics Hub. We wish to acknowledge the use of the services and facilities of the Ramaciotti Centre for Genomics, UNSW and of the Australian Genome Research Facility.